Add tutorials with DuMux as solver into system tests

.github/workflows/system-tests-latest-components.yml

@@ -4,7 +4,7 @@ on:
   schedule:
     - cron: "0 4 * * *"
   workflow_dispatch:
-    
+
 jobs:
   gather-refs:
     name: Map Git branches to latest refs
@@ -140,6 +140,9 @@ jobs:
         OPENFOAM_ADAPTER_REF:${{ needs.gather-refs.outputs.ref-openfoam-adapter }},\
         SU2_VERSION:7.5.1,\
         SU2_ADAPTER_REF:${{ needs.gather-refs.outputs.ref-su2-adapter }},\
+        DUNE_VERSION:2.9,\
+        DUMUX_VERSION:3.7,\
+        MICRO_MANAGER_VERSION:0.8.0,\
         TUTORIALS_REF:${{ needs.gather-refs.outputs.ref-tutorials }}"
       system_tests_branch: develop
-      log_level: "INFO"
+      log_level: "INFO"

free-flow-over-porous-media/metadata.yaml

@@ -0,0 +1,21 @@
+name: Free flow over porous media
+path: free-flow-over-porous-media
+url: https://precice.org/tutorials-free-flow-over-porous-media.html
+
+participants:
+  - Free-Flow 
+  - Porous-Media
+
+cases:
+  free-flow-dumux:
+    participant: Free-Flow
+    directory: ./free-flow-dumux
+    run: ./run.sh
+    component: dumux-adapter
+
+  porous-media-dumux:
+    participant: Porous-Media
+    directory: ./porous-media-dumux
+    run: ./run.sh 
+    component: dumux-adapter
+

tools/tests/component-templates/dumux-adapter.yaml

@@ -0,0 +1,16 @@
+build: 
+  context: {{ dockerfile_context }}
+  args:
+    {% for key, value in build_arguments.items() %}
+      - {{key}}={{value}}
+    {% endfor %}
+  target: dumux_adapter
+depends_on:    
+  prepare:
+    condition: service_completed_successfully
+volumes:
+  - {{ run_directory }}:/runs
+command: >
+  /bin/bash -c "id && 
+  cd '/runs/{{ tutorial_folder }}/{{ case_folder }}' &&
+  {{ run }} | tee system-tests_{{ case_folder }}.log 2>&1"

tools/tests/component-templates/micro-manager.yaml

@@ -0,0 +1,16 @@
+build:
+  context: {{ dockerfile_context }}
+  args:
+    {% for key, value in build_arguments.items() %}
+      - {{key}}={{value}}
+    {% endfor %}
+  target: micro_manager
+depends_on:
+  prepare:
+    condition: service_completed_successfully
+volumes:
+  - {{ run_directory }}:/runs
+command: >
+  /bin/bash -c "id &&
+  cd '/runs/{{ tutorial_folder }}/{{ case_folder }}' &&
+  {{ run }} | tee system-tests_{{ case_folder }}.log 2>&1"

tools/tests/components.yaml

@@ -165,4 +165,50 @@ dealii-adapter:
       default: "master"
     DEALII_ADAPTER_REF:
       description: Version of deal.ii-adapter to use
-      default: "master"
+      default: "master"
+
+dumux-adapter:
+  repository: https://github.com/precice/dumux-adapter
+  template: component-templates/dumux-adapter.yaml
+  build_arguments:
+    PLATFORM:
+      description: Dockerfile platform used
+      default: "ubuntu_2404"
+    PRECICE_REF:
+      description: Version of preCICE to use
+      default: "main"
+    PRECICE_PRESET:
+      description: CMake preset of preCICE
+      default: "production-audit"
+    TUTORIALS_REF:
+      description: Tutorial git reference to use
+      default: "master"
+    DUNE_VERSION:
+      description: Version of DUNE to use
+      default: "2.9"
+    DUMUX_VERSION:
+      description: Version of DuMux to use
+      default: "3.7"
+    DUMUX_ADAPTER_REF:
+      semnantic: Git ref of the dumux adapter to use
+      default: "main"
+
+micro-manager:
+  repository: https://github.com/precice/micro-manager
+  template: component-templates/micro-manager.yaml
+  build_arguments:
+    PLATFORM:
+      description: Dockerfile platform used
+      default: "ubuntu_2404"
+    PRECICE_REF:
+      description: Version of preCICE to use
+      default: "main"
+    PRECICE_PRESET:
+      description: CMake preset of preCICE
+      default: "production-audit"
+    TUTORIALS_REF:
+      description: Tutorial git reference to use
+      default: "master"
+    MICRO_MANAGER_VERSION:
+      description: Version of Micro-Manager to use
+      default: "0.8.0"

tools/tests/dockerfiles/ubuntu_2404/Dockerfile

@@ -22,25 +22,25 @@ USER root
 # Installing necessary dependecies for preCICE
 RUN apt-get -qq update && \
     apt-get -qq -y install \
-        build-essential \
-        software-properties-common \
-        cmake \
-        curl \
-        g++ \
-        gfortran \
-        git \
-        libbenchmark-dev \
-        libboost-all-dev \
-        libeigen3-dev \
-        libxml2-dev \
-        lsb-release \
-        petsc-dev \
-        python3-dev \
-        python3-numpy \
-        python3-pip \
-        python3-venv \
-        pkg-config \
-        wget
+    build-essential \
+    software-properties-common \
+    cmake \
+    curl \
+    g++ \
+    gfortran \
+    git \
+    libbenchmark-dev \
+    libboost-all-dev \
+    libeigen3-dev \
+    libxml2-dev \
+    lsb-release \
+    petsc-dev \
+    python3-dev \
+    python3-numpy \
+    python3-pip \
+    python3-venv \
+    pkg-config \
+    wget
 USER precice
 
 FROM precice_dependecies AS precice
@@ -187,4 +187,51 @@ RUN git clone https://github.com/precice/dealii-adapter.git &&\
     if [ -n "${DEALII_ADAPTER_PR}" ]; then git fetch origin pull/${DEALII_ADAPTER_PR}/head; fi && \
     git checkout ${DEALII_ADAPTER_REF} && \
     cmake . && \
-    make -j $(nproc)
+    make -j $(nproc)
+
+
+FROM precice_dependecies AS micro_manager
+USER root
+WORKDIR /home/precice
+USER precice
+COPY --from=precice /home/precice/.local/ /home/precice/.local/
+
+ARG MICRO_MANAGER_VERSION
+RUN python3 -m venv /home/precice/venv && \
+    . /home/precice/venv/bin/activate && \
+    git clone https://github.com/precice/micro-manager.git && \
+    cd micro-manager && \
+    git checkout ${MICRO_MANAGER_VERSION} && \
+    pip3 install .
+
+FROM micro_manager AS dumux_adapter
+USER root
+COPY --from=precice /home/precice/.local/ /home/precice/.local/
+ARG DUNE_VERSION
+ARG DUMUX_VERSION
+USER precice
+WORKDIR /home/precice
+RUN mkdir dumux&&\
+    cd dumux&&\
+    git clone --depth 1 https://gitlab.dune-project.org/core/dune-common.git -b releases/${DUNE_VERSION} &&\
+    git clone --depth 1 https://gitlab.dune-project.org/core/dune-geometry.git -b releases/${DUNE_VERSION} &&\
+    git clone --depth 1 https://gitlab.dune-project.org/core/dune-grid.git -b releases/${DUNE_VERSION} &&\
+    git clone --depth 1 https://gitlab.dune-project.org/core/dune-istl.git -b releases/${DUNE_VERSION} &&\
+    git clone --depth 1 https://gitlab.dune-project.org/extensions/dune-subgrid.git -b releases/${DUNE_VERSION} &&\
+    git clone --depth 1 https://git.iws.uni-stuttgart.de/dumux-repositories/dumux.git -b releases/${DUMUX_VERSION} &&\
+    git clone -b cell_problems https://git.iws.uni-stuttgart.de/dumux-appl/dumux-phasefield.git &&\
+    git clone --depth 1 https://gitlab.dune-project.org/extensions/dune-SPGrid.git -b releases/${DUNE_VERSION} &&\
+    git clone --depth 1 https://gitlab.dune-project.org/core/dune-localfunctions.git -b releases/${DUNE_VERSION}
+WORKDIR /home/precice/dumux
+ENV PATH="/home/precice/dumux/dune-common/bin:${PATH}"
+# build core DUNE, DuMuX and the adapter
+RUN dunecontrol --opts=./dumux/cmake.opts all
+ENV DUNE_CONTROL_PATH=/home/precice/dumux/dune-common/dune.module:/home/precice/dumux/dune-geometry/dune.module:/home/precice/dumux/dune-grid/dune.module:/home/precice/dumux/dune-localfunctions/dune.module:/home/precice/dumux/dune-istl/dune.module:/home/precice/dumux/dune-subgrid/dune.module:/home/precice/dumux/dumux/dune.module
+ARG DUMUX_ADAPTER_PR
+ARG DUMUX_ADAPTER_REF
+RUN git clone https://github.com/precice/dumux-adapter.git &&\
+    cd dumux-adapter && \
+    if [ -n "${DUMUX_ADAPTER_PR}" ]; then git fetch origin pull/${DUMUX_ADAPTER_PR}/head; fi && \
+    git checkout ${DUMUX_ADAPTER_REF} && \
+    cd .. &&\
+    ./dune-common/bin/dunecontrol --opts=./dumux/cmake.opts all

tools/tests/reference_versions.yaml

@@ -11,3 +11,7 @@ CALCULIX_ADAPTER_REF: "v2.20.1"
 SU2_VERSION: "7.5.1"
 SU2_ADAPTER_REF: "64d4aff" # Distribution v2404
 DEALII_ADAPTER_REF: "02c5d18" # develop, April 12, 2025
+DUNE_VERSION: "2.9"
+DUMUX_VERSION: "3.7"
+DUMUX_ADAPTER_REF: "v3.0.0"
+MICRO_MANAGER_VERSION: "v0.8.0"

tools/tests/tests.yaml

@@ -22,8 +22,8 @@ test_suites:
     tutorials:
       - path: flow-over-heated-plate
         case_combination:
-         - fluid-openfoam
-         - solid-fenics
+          - fluid-openfoam
+          - solid-fenics
         reference_result: ./flow-over-heated-plate/reference-results/fluid-openfoam_solid-fenics.tar.gz
   nutils_test:
     tutorials:
@@ -39,6 +39,18 @@ test_suites:
           - fluid-openfoam
           - solid-calculix
         reference_result: ./perpendicular-flap/reference-results/fluid-openfoam_solid-calculix.tar.gz
+  dumux_test:
+    tutorials:
+      # - path: free-flow-over-porous-media
+      #   case_combination:
+      #     - free-flow-dumux
+      #     - porous-media-dumux
+      #   reference_result: ./free-flow-over-porous-media/reference-results/free-flow-dumux_porous-media-dumux.tar.gz
+      - path: two-scale-heat-conduction
+        case_combination:
+          - macro-dumux
+          - micro-dumux
+        reference_result: ./two-scale-heat-conduction/reference-results/macro-dumux_micro-dumux.tar.gz
   su2_test:
     tutorials:
       - path: perpendicular-flap
@@ -128,4 +140,4 @@ test_suites:
           - fluid-openfoam
           - solid-upstream-dealii
           - solid-downstream-dealii
-        reference_result: ./perpendicular-flap/reference-results/fluid-openfoam_solid-upstream-dealii_solid-downstream-dealii.tar.gz
+        reference_result: ./perpendicular-flap/reference-results/fluid-openfoam_solid-upstream-dealii_solid-downstream-dealii.tar.gz

two-scale-heat-conduction/metadata.yaml

@@ -0,0 +1,20 @@
+name: Two-scale heat conduction
+path: two-scale-heat-conduction
+url: https://precice.org/tutorials-two-scale-heat-conduction.html
+
+participants:
+  - macro-heat
+  - Micro-Manager
+
+cases:
+  macro-dumux:
+    participant: macro-heat
+    directory: ./macro-dumux
+    run: ./../compile-dumux-cases.sh && ./run.sh
+    component: dumux-adapter
+
+  micro-dumux:
+    participant: Micro-Manager
+    directory: ./micro-dumux
+    run: ./../compile-dumux-cases.sh && ./run.sh
+    component: dumux-adapter