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@obophenotype

obophenotype

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  1. human-phenotype-ontology human-phenotype-ontology Public

    Ontology for the description of human clinical features

    Makefile 330 58

  2. cell-ontology cell-ontology Public

    An ontology of cell types

    Makefile 186 60

  3. uberon uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    Emacs Lisp 147 36

  4. upheno upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    Jupyter Notebook 83 20

  5. ncbitaxon ncbitaxon Public

    Build for NCBITaxon

    Python 30 8

  6. bio-attribute-ontology bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    Jupyter Notebook 27 12

Repositories

Showing 10 of 65 repositories
  • uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    obophenotype/uberon’s past year of commit activity
    Emacs Lisp 147 36 299 (2 issues need help) 19 Updated Jan 23, 2026
  • cell-ontology Public

    An ontology of cell types

    obophenotype/cell-ontology’s past year of commit activity
    Makefile 186 CC-BY-4.0 60 304 34 Updated Jan 21, 2026
  • developmental-mouse-anatomy-ontology Public

    Ontologies for mouse anatomy and development

    obophenotype/developmental-mouse-anatomy-ontology’s past year of commit activity
    Makefile 5 4 56 0 Updated Jan 21, 2026
  • bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    obophenotype/bio-attribute-ontology’s past year of commit activity
    Jupyter Notebook 27 CC0-1.0 12 89 9 Updated Jan 21, 2026
  • human-phenotype-ontology Public

    Ontology for the description of human clinical features

    obophenotype/human-phenotype-ontology’s past year of commit activity
    Makefile 330 58 113 6 Updated Jan 20, 2026
  • caro Public

    Working repository for v2 of CARO

    obophenotype/caro’s past year of commit activity
    Makefile 3 CC-BY-4.0 4 20 0 Updated Jan 19, 2026
  • zebrafish-phenotype-ontology Public

    A vocabulary for describing Zebrafish Phenotypes

    obophenotype/zebrafish-phenotype-ontology’s past year of commit activity
    Python 9 6 21 3 Updated Jan 19, 2026
  • adult-mouse-anatomy-ontology Public

    The Home of the (Adult) Mouse Anatomy ontology

    obophenotype/adult-mouse-anatomy-ontology’s past year of commit activity
    Makefile 0 0 0 0 Updated Jan 15, 2026
  • upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    obophenotype/upheno’s past year of commit activity
    Jupyter Notebook 83 CC0-1.0 20 271 (5 issues need help) 21 Updated Jan 14, 2026
  • chebi_obo_slim Public

    A slimmed down version of CHEBI sufficient to cover 99% of the term needs across OBO ontologies

    obophenotype/chebi_obo_slim’s past year of commit activity
    Ruby 4 3 4 2 Updated Jan 14, 2026
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