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…and some of their information #182
| #get outpath name from metapid | ||
| systema <- getSystemMetadata(mn, metapid) | ||
| systema_name <- systema@fileName | ||
| outpath <- paste("/home/mnguyen/", systema_name, sep = "") |
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this is a path to my user... not sure how else to create an outpath that could apply to any user
dmullen17
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dmullen17
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This is a good start. See if you can make some of the changes and then we can move forward from there
| outpath <- paste("/home/mnguyen/", systema_name, sep = "") | ||
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| #download data from metapid | ||
| download_data_objects(mn, c(metapid), c(outpath)) |
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This is pretty useful: You can download dataone objects directly like this eml <- read_eml(rawToChar(dataone::getObject(mn, metapid)))
So you won't need to use download_data_objects
| #the raw award string numbers | ||
| raw_award_string <- c() | ||
| funding <- eml@dataset@project@funding@para | ||
| for(i in 1:length(funding)){ |
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if you change this to seq_along(funding) then it handles the case where length = 0. Rather than the case of for in 1:0 which gives you an error
| raw_award_string <- c() | ||
| funding <- eml@dataset@project@funding@para | ||
| for(i in 1:length(funding)){ | ||
| award <- funding@.Data[[i]]@.Data[[1]] |
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You might be able to replace some of these with eml_get function. Look up the documentation with ?eml_get and see if you can use it to simplify some of the code
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| #get xml from metapid | ||
| eml <- read_eml(eml_file) #read in eml_file | ||
| list <- list() #will be output list |
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You generally don't want to name your objects using already existing names. Since list is already the name of a function you want to rename your list to something like "output"
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