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    25 repositories

    • gnomix

      Public
      A fast, scalable, and accurate local ancestry method.
      machine-learninggenomicsancestry
      Python
      •
      Other
      •16•106•25•2•Updated Dec 4, 2025Dec 4, 2025

    • mdPCA

      Public
      Python
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • HyperFast

      Public
      HyperFast : Instant Classification for Tabular Data
      Python
      •
      Other
      •15•76•1•0•Updated Nov 26, 2025Nov 26, 2025

    • iLTM

      Public
      iLTM: Integrated Large Tabular Model
      pythonmachine-learningdeep-learningtabular-datapytorchmeta-learningpretraining
      Python
      •
      Apache License 2.0
      •0•11•0•0•Updated Nov 21, 2025Nov 21, 2025

    • snputils

      Public
      A Python library for processing genomes with ease
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•35•0•0•Updated Oct 25, 2025Oct 25, 2025

    • neural-admixture

      Public
      Rapid population clustering with autoencoders
      machine-learninggenomicspopulation-geneticsadmixtureancestry-inference
      Python
      •11•86•5•0•Updated Sep 29, 2025Sep 29, 2025

    • SNP2ARG

      Public
      Infer Ancestral Recombination Graphs with Deep Learning
      BSD 2-Clause "Simplified" License
      •0•2•0•0•Updated Jul 20, 2025Jul 20, 2025

    • FSL-Net

      Public
      Python
      •
      Other
      •0•1•1•0•Updated Jun 5, 2025Jun 5, 2025

    • SALAI-Net

      Public
      Python
      •
      Other
      •2•15•2•0•Updated Mar 24, 2025Mar 24, 2025

    • aegen

      Public
      Autoencoders for genomic data compression, classification, imputation, phasing and simulation.
      compressionsimulationclassificationimputationphasing
      Python
      •
      Other
      •2•3•0•0•Updated Mar 3, 2025Mar 3, 2025

    • asPopGenStats

      Public
      Ancestry-specific tool for calculating population genetics statistics from Gnomix output
      Python
      •0•5•0•0•Updated Jul 8, 2024Jul 8, 2024

    • DataFix

      Public
      Jupyter Notebook
      •
      Other
      •3•9•0•0•Updated Feb 1, 2024Feb 1, 2024

    • PopGenAdapt

      Public
      Semi-Supervised Domain Adaptation for Genotype-to-Phenotype Prediction in Underrepresented Populations
      Python
      •0•5•0•0•Updated Jan 11, 2024Jan 11, 2024

    • MergeGenome

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 2, 2024Jan 2, 2024

    • archetypal-analysis

      Public
      Python
      •1•15•1•1•Updated Dec 7, 2023Dec 7, 2023

    • completion

      Public
      Python
      •1•10•0•2•Updated Sep 27, 2023Sep 27, 2023

    • XGMix

      Public
      Jupyter Notebook
      •2•14•0•5•Updated Nov 22, 2022Nov 22, 2022

    • adversarial-attack-genotype

      Public
      Official code for "Adversarial Attacks on Genotype Sequences" paper
      Jupyter Notebook
      •0•2•0•0•Updated Nov 9, 2022Nov 9, 2022

    • intro_to_machine_learning

      Public
      SCSS
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

    • GMMN-genotype-simulation

      Public
      This repository includes a python implementation of a GMMN to generate genotypes of a particular ancestry
      Python
      •0•1•0•0•Updated May 5, 2022May 5, 2022

    • genTools

      Public
      genomic tools
      Python
      •0•1•0•0•Updated Apr 11, 2022Apr 11, 2022

    • LAI-Net

      Public
      Official implementation of LAI-Net
      Python
      •2•5•2•0•Updated Apr 11, 2022Apr 11, 2022

    • hyperPop

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Feb 22, 2022Feb 22, 2022

    • genTopo

      Public
      genetic topology, TDA on DNA
      Jupyter Notebook
      •0•1•0•0•Updated Feb 24, 2021Feb 24, 2021

    • XGMix-models

      Public
      0•2•0•0•Updated Jul 22, 2020Jul 22, 2020